rs8258287 SNP Detail

Summary

• ID
  rs8258287
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80641765 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CAGAA ATTCCCTCAG CTGGACTCTT
  M
  ACTGGAGATC TTCTGGGGCC ATGTA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12754584	X83733_MC1133_1	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	BALB/cJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8258287					SNP	C	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80641765 () rs orientation: reverse

Symbol	Name	Function Class
Amh	anti-Mullerian hormone	within coordinates
Cpgi1909	CpG island 1909	447 bp proximal
Rr366747	regulatory region 366747	649 bp downstream
Rr435397	regulatory region 435397	1263 bp distal
Rr435398	regulatory region 435398	130 bp proximal
Rr435399	regulatory region 435399	1167 bp proximal
Sf3a2	splicing factor 3a, subunit 2	1009 bp downstream
Tssr94618	transcription start site region 94618	1868 bp downstream
Tssr94619	transcription start site region 94619	1841 bp downstream
Tssr94620	transcription start site region 94620	1813 bp downstream
Tssr94621	transcription start site region 94621	1781 bp downstream
Tssr94622	transcription start site region 94622	1704 bp downstream
Tssr94623	transcription start site region 94623	1191 bp downstream
Tssr94624	transcription start site region 94624	682 bp downstream
Tssr94625	transcription start site region 94625	197 bp upstream
Tssr94626	transcription start site region 94626	468 bp upstream
Tssr94627	transcription start site region 94627	899 bp upstream
Tssr94628	transcription start site region 94628	1744 bp upstream
Tssr98515	transcription start site region 98515	1860 bp upstream
Tssr98516	transcription start site region 98516	1702 bp downstream