rs8258289 SNP Detail

Summary

• ID
  rs8258289
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80641655 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GCTGT CATCTGTCTG GAAGGTGTGA
  Y
  CATTGGGGTG TGTCCTGCCA TCTTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cJ	C57BL/6J	CAST/EiJ	NZB/BlNJ	SPRET/EiJ
ss12754586	X83733_MC1133_3	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	BALB/cJ	C57BL/6J	CAST/EiJ	NZB/BlNJ	SPRET/EiJ
rs8258289					SNP	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80641655 () rs orientation: reverse

Symbol	Name	Function Class
Amh	anti-Mullerian hormone	within coordinates
Cpgi1909	CpG island 1909	557 bp proximal
Rr366747	regulatory region 366747	539 bp downstream
Rr435397	regulatory region 435397	1153 bp distal
Rr435398	regulatory region 435398	240 bp proximal
Rr435399	regulatory region 435399	1277 bp proximal
Sf3a2	splicing factor 3a, subunit 2	899 bp downstream
Tssr94618	transcription start site region 94618	1758 bp downstream
Tssr94619	transcription start site region 94619	1731 bp downstream
Tssr94620	transcription start site region 94620	1703 bp downstream
Tssr94621	transcription start site region 94621	1671 bp downstream
Tssr94622	transcription start site region 94622	1594 bp downstream
Tssr94623	transcription start site region 94623	1081 bp downstream
Tssr94624	transcription start site region 94624	572 bp downstream
Tssr94625	transcription start site region 94625	307 bp upstream
Tssr94626	transcription start site region 94626	578 bp upstream
Tssr94627	transcription start site region 94627	1009 bp upstream
Tssr94628	transcription start site region 94628	1854 bp upstream
Tssr98515	transcription start site region 98515	1750 bp upstream
Tssr98516	transcription start site region 98516	1812 bp downstream