rs8258290 SNP Detail

Summary

• ID
  rs8258290
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80641619 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGTCC TGCCATCTTG CCCACTACAG
  H
  TCCTGAAAGG GTGTATAAGG TTCTG                                      
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	BALB/cJ	NZB/BlNJ	SPRET/EiJ
ss12754587	X83733_MC1133_4	ROCHEBIO	RPAMM	f	SNP	T	A	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	BALB/cJ	NZB/BlNJ	SPRET/EiJ
rs8258290					SNP	T	A	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80641619 () rs orientation: reverse

Symbol	Name	Function Class
Amh	anti-Mullerian hormone	within coordinates
Cpgi1909	CpG island 1909	593 bp proximal
Rr366747	regulatory region 366747	503 bp downstream
Rr435397	regulatory region 435397	1117 bp distal
Rr435398	regulatory region 435398	276 bp proximal
Rr435399	regulatory region 435399	1313 bp proximal
Sf3a2	splicing factor 3a, subunit 2	863 bp downstream
Tssr94618	transcription start site region 94618	1722 bp downstream
Tssr94619	transcription start site region 94619	1695 bp downstream
Tssr94620	transcription start site region 94620	1667 bp downstream
Tssr94621	transcription start site region 94621	1635 bp downstream
Tssr94622	transcription start site region 94622	1558 bp downstream
Tssr94623	transcription start site region 94623	1045 bp downstream
Tssr94624	transcription start site region 94624	536 bp downstream
Tssr94625	transcription start site region 94625	343 bp upstream
Tssr94626	transcription start site region 94626	614 bp upstream
Tssr94627	transcription start site region 94627	1045 bp upstream
Tssr94628	transcription start site region 94628	1890 bp upstream
Tssr98515	transcription start site region 98515	1714 bp upstream
Tssr98516	transcription start site region 98516	1848 bp downstream