rs8258291 SNP Detail

Summary

• ID
  rs8258291
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80642027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGACTCAG TCAACCAATA
  TTTGCCCACA GTGATATGGG AGCCCGAGCT CTTGCTGAAG TTCCAAGAGC CTCCACCTGG
  GGGAGCCAGC CGCTGGGAGC AGGCCCTGTT AGTGCTATAC CCTGGACCAG GCCCCCAGGT
  CACAGTCACA GGGACTGGAC TGCGGGGCAC ACAGGTACCA GAGACTGGCA TGGGCCCATC
  Y
  CCTAACAGCC TTCTGGTTGA GGTTGTGCCA AATGGAAGGG TTGGTGGGGT TAGGAGTACA
  CCTGGGAGGC TATTCCCAGT ATGGCAGGGG TGGTGCCTGT AGCCTGACCA TCTTCCCCAG
  TCCTGCTGAC AAGAGTCCCT GTGTCCACAG AACCTCTGCC CTACTCGGGA CACCCGCTAT
  TTGGTGCTAA CCGTGGACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	BALB/cByJ	BALB/cJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12754588	X83733_MC1134_1	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	BALB/cByJ	BALB/cJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8258291					SNP	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80642027 () rs orientation: forward

Symbol	Name	Function Class
Amh	anti-Mullerian hormone	within coordinates
Cpgi1909	CpG island 1909	185 bp proximal
Cpgi1910	CpG island 1910	1974 bp proximal
Rr366747	regulatory region 366747	911 bp downstream
Rr435397	regulatory region 435397	1525 bp distal
Rr435398	regulatory region 435398	111 bp distal
Rr435399	regulatory region 435399	905 bp proximal
Sf3a2	splicing factor 3a, subunit 2	1271 bp downstream
Tssr94622	transcription start site region 94622	1966 bp downstream
Tssr94623	transcription start site region 94623	1453 bp downstream
Tssr94624	transcription start site region 94624	944 bp downstream
Tssr94625	transcription start site region 94625	52 bp downstream
Tssr94626	transcription start site region 94626	206 bp upstream
Tssr94627	transcription start site region 94627	637 bp upstream
Tssr94628	transcription start site region 94628	1482 bp upstream
Tssr98516	transcription start site region 98516	1440 bp downstream