rs8258292 SNP Detail

Summary

• ID
  rs8258292
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80642123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCAGGCCC TGTTAGTGCT
  ATACCCTGGA CCAGGCCCCC AGGTCACAGT CACAGGGACT GGACTGCGGG GCACACAGGT
  ACCAGAGACT GGCATGGGCC CATCCCCTAA CAGCCTTCTG GTTGAGGTTG TGCCAAATGG
  AAGGGTTGGT GGGGTTAGGA GTACACCTGG GAGGCTATTC CCAGTATGGC AGGGGTGGTG
  Y
  CTGTAGCCTG ACCATCTTCC CCAGTCCTGC TGACAAGAGT CCCTGTGTCC ACAGAACCTC
  TGCCCTACTC GGGACACCCG CTATTTGGTG CTAACCGTGG ACTTCCCAGC GGGGGCCTGG
  AGCGGCTCGG GCCTCATCTT AACCCTTCAA CCAAGCAGAG AAGGTAGGTC CTGGCAGAGG
  GGAGGGGACA GAGTGGAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	BALB/cByJ	BALB/cJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12754589	X83733_MC1134_2	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	BALB/cByJ	BALB/cJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8258292					SNP	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80642123 () rs orientation: forward

Symbol	Name	Function Class
Amh	anti-Mullerian hormone	within coordinates
Cpgi1909	CpG island 1909	89 bp proximal
Cpgi1910	CpG island 1910	1878 bp proximal
Rr366747	regulatory region 366747	1007 bp downstream
Rr435397	regulatory region 435397	1621 bp distal
Rr435398	regulatory region 435398	207 bp distal
Rr435399	regulatory region 435399	809 bp proximal
Sf3a2	splicing factor 3a, subunit 2	1367 bp downstream
Tssr94623	transcription start site region 94623	1549 bp downstream
Tssr94624	transcription start site region 94624	1040 bp downstream
Tssr94625	transcription start site region 94625	148 bp downstream
Tssr94626	transcription start site region 94626	110 bp upstream
Tssr94627	transcription start site region 94627	541 bp upstream
Tssr94628	transcription start site region 94628	1386 bp upstream
Tssr98516	transcription start site region 98516	1344 bp downstream