rs8258293 SNP Detail

Summary

• ID
  rs8258293
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80642151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCAGGCCC CCAGGTCACA
  GTCACAGGGA CTGGACTGCG GGGCACACAG GTACCAGAGA CTGGCATGGG CCCATCCCCT
  AACAGCCTTC TGGTTGAGGT TGTGCCAAAT GGAAGGGTTG GTGGGGTTAG GAGTACACCT
  GGGAGGCTAT TCCCAGTATG GCAGGGGTGG TGCCTGTAGC CTGACCATCT TCCCCAGTCC
  W
  GCTGACAAGA GTCCCTGTGT CCACAGAACC TCTGCCCTAC TCGGGACACC CGCTATTTGG
  TGCTAACCGT GGACTTCCCA GCGGGGGCCT GGAGCGGCTC GGGCCTCATC TTAACCCTTC
  AACCAAGCAG AGAAGGTAGG TCCTGGCAGA GGGGAGGGGA CAGAGTGGAA GGAAGCTGCC
  CTTAACCCCA GCCCTCAGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	BALB/cByJ	BALB/cJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12754590	X83733_MC1134_3	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	BALB/cByJ	BALB/cJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8258293					SNP	T	T	T	T	T	T	T	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80642151 () rs orientation: forward

Symbol	Name	Function Class
Amh	anti-Mullerian hormone	within coordinates
Cpgi1909	CpG island 1909	61 bp proximal
Cpgi1910	CpG island 1910	1850 bp proximal
Rr366747	regulatory region 366747	1035 bp downstream
Rr435397	regulatory region 435397	1649 bp distal
Rr435398	regulatory region 435398	235 bp distal
Rr435399	regulatory region 435399	781 bp proximal
Sf3a2	splicing factor 3a, subunit 2	1395 bp downstream
Tssr94623	transcription start site region 94623	1577 bp downstream
Tssr94624	transcription start site region 94624	1068 bp downstream
Tssr94625	transcription start site region 94625	176 bp downstream
Tssr94626	transcription start site region 94626	82 bp upstream
Tssr94627	transcription start site region 94627	513 bp upstream
Tssr94628	transcription start site region 94628	1358 bp upstream
Tssr98516	transcription start site region 98516	1316 bp downstream