rs8258294 SNP Detail

Summary

• ID
  rs8258294
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80642291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGGCTAT TCCCAGTATG
  GCAGGGGTGG TGCCTGTAGC CTGACCATCT TCCCCAGTCC TGCTGACAAG AGTCCCTGTG
  TCCACAGAAC CTCTGCCCTA CTCGGGACAC CCGCTATTTG GTGCTAACCG TGGACTTCCC
  AGCGGGGGCC TGGAGCGGCT CGGGCCTCAT CTTAACCCTT CAACCAAGCA GAGAAGGTAG
  R
  TCCTGGCAGA GGGGAGGGGA CAGAGTGGAA GGAAGCTGCC CTTAACCCCA GCCCTCAGCC
  AGCACGTGCC CACCCTCTAC AGGTGCCACC CTGAGCATCG ATCAGCTGCA AGCCTTTCTA
  TTTGGCTCTG ATTCCCGCTG TTTCACGCGG ATGACTCCCA CCCTGGTGGT GCTGCCACCC
  GCCGAGCCGT CACCGCAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	BALB/cByJ	BALB/cJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12754591	X83733_MC1134_4	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	BALB/cByJ	BALB/cJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8258294					SNP	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80642291 () rs orientation: forward

Symbol	Name	Function Class
Amh	anti-Mullerian hormone	within coordinates
Cpgi1909	CpG island 1909	within coordinates
Cpgi1910	CpG island 1910	1710 bp proximal
Rr366747	regulatory region 366747	1175 bp downstream
Rr435397	regulatory region 435397	1789 bp distal
Rr435398	regulatory region 435398	375 bp distal
Rr435399	regulatory region 435399	641 bp proximal
Sf3a2	splicing factor 3a, subunit 2	1535 bp downstream
Tssr94623	transcription start site region 94623	1717 bp downstream
Tssr94624	transcription start site region 94624	1208 bp downstream
Tssr94625	transcription start site region 94625	316 bp downstream
Tssr94626	transcription start site region 94626	47 bp downstream
Tssr94627	transcription start site region 94627	373 bp upstream
Tssr94628	transcription start site region 94628	1218 bp upstream
Tssr98516	transcription start site region 98516	1176 bp downstream