rs8258295 SNP Detail

Summary

• ID
  rs8258295
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80642907 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AGGCC CGCTGCCCAG GGAGCAGAAG
  Y
  GGGGCCGTGC AGCGGCATAG GTTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12754592	X83733_MC1135_1	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8258295					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80642907 () rs orientation: reverse

Symbol	Name	Function Class
Amh	anti-Mullerian hormone	within coordinates
Cpgi1909	CpG island 1909	within coordinates
Cpgi1910	CpG island 1910	1094 bp proximal
Jsrp1	junctional sarcoplasmic reticulum protein 1	1423 bp downstream
Rr366747	regulatory region 366747	1791 bp downstream
Rr435398	regulatory region 435398	991 bp distal
Rr435399	regulatory region 435399	25 bp proximal
Tssr94624	transcription start site region 94624	1824 bp downstream
Tssr94625	transcription start site region 94625	932 bp downstream
Tssr94626	transcription start site region 94626	663 bp downstream
Tssr94627	transcription start site region 94627	233 bp downstream
Tssr94628	transcription start site region 94628	602 bp upstream
Tssr98516	transcription start site region 98516	560 bp downstream