rs8258297 SNP Detail

Summary

• ID
  rs8258297
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:80642744 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              ACCCTGCGTT GCAGGCCCGC
  TGCCCAGGGA GCAGAAGCGG GGCCGTGCAG CGGCATAGGT TCCCTCTCCG TGGCCGCAGC
  GGGTGACAGC AGCAGTAATA GGGGTTCCTC CCAGTCGAGC AGGCGTCCCA GTGCTGCGGG
  GTCTGACAGG TTGACCAGGC CCTGTGGGAA GCTGGCCAGC GCACCAGGGT CCAGGGCCAG
  W
  TGCGTGTTCG AAGCCTGGGT CAGAGGTCCC CGCAGAGCAC GAACCAAGCG AGTGAGGGTC
  TCTAGGAAGG GGTCGGCGCT GTGTGGCAGG GCCTCAGGCT CCAGGGACAG TCTGGAATAG
  AACGAAGTGG GCCAGCTGTG AGCACAAGAG GCTATGGTGG ACCAACTACC CCCTCCAACG
  TCCCAGTTCC TCCTCCATCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12754595	X83733_MC1135_4	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	A	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8258297					SNP	T	T	T	T	T	T	T	A	T	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80642744 () rs orientation: reverse

Symbol	Name	Function Class
Amh	anti-Mullerian hormone	Coding-NonSynonymous
Cpgi1909	CpG island 1909	within coordinates
Cpgi1910	CpG island 1910	1257 bp proximal
Jsrp1	junctional sarcoplasmic reticulum protein 1	1586 bp downstream
Rr366747	regulatory region 366747	1628 bp downstream
Rr435398	regulatory region 435398	828 bp distal
Rr435399	regulatory region 435399	188 bp proximal
Sf3a2	splicing factor 3a, subunit 2	1988 bp downstream
Tssr94624	transcription start site region 94624	1661 bp downstream
Tssr94625	transcription start site region 94625	769 bp downstream
Tssr94626	transcription start site region 94626	500 bp downstream
Tssr94627	transcription start site region 94627	70 bp downstream
Tssr94628	transcription start site region 94628	765 bp upstream
Tssr98516	transcription start site region 98516	723 bp downstream