rs8258298 SNP Detail

Summary

• ID
  rs8258298
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80642732 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GGTCC AGGGCCAGTT GCGTGTTCGA
  R
  GCCTGGGTCA GAGGTCCCCG CAGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12754596	X83733_MC1135_5	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8258298					SNP	A	A	A	A	A	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80642732 () rs orientation: reverse

Symbol	Name	Function Class
Amh	anti-Mullerian hormone	within coordinates
Cpgi1909	CpG island 1909	within coordinates
Cpgi1910	CpG island 1910	1269 bp proximal
Jsrp1	junctional sarcoplasmic reticulum protein 1	1598 bp downstream
Rr366747	regulatory region 366747	1616 bp downstream
Rr435398	regulatory region 435398	816 bp distal
Rr435399	regulatory region 435399	200 bp proximal
Sf3a2	splicing factor 3a, subunit 2	1976 bp downstream
Tssr94624	transcription start site region 94624	1649 bp downstream
Tssr94625	transcription start site region 94625	757 bp downstream
Tssr94626	transcription start site region 94626	488 bp downstream
Tssr94627	transcription start site region 94627	58 bp downstream
Tssr94628	transcription start site region 94628	777 bp upstream
Tssr98516	transcription start site region 98516	735 bp downstream