rs8258301 SNP Detail

Summary

• ID
  rs8258301
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:86543182 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

        TTNT TAANGGGCCA GGGGGAGGAA AATCGGGGTG CCCCNGGGNG GAANTGAAAA
  W
  NAAATTTTCC CCCCAAAAAA AAGCGGGGGG GTTTTGGGGt tttttttttt tttttttttt
  tttttGGGGG GGGGGGGTAG AAGTTTCTGC AGATGATGGT CCCCagatag aaaggagaga
  gagagagaat cagagagaga gaATCTACTT CCAGACTGGC AGAAGATGGT CAGTCCTTAT
  CTGACTTGCT GGCCAAGCTC CCTGGAAAAN ACATGGCTTT CAGCTGAGGA GAGATGGCTT
  AGTGGAAAA                                                        
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ
ss12754599	AF091114_MC1136_2	ROCHEBIO	RPAMM	f	SNP	A	A	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ
rs8258301					SNP	A	A	A	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86543182 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2068	CpG island 2068	842 bp distal
Gm54730	predicted gene, 54730	1870 bp upstream
Hsp90b1	heat shock protein 90, beta (Grp94), member 1	1874 bp upstream
Rr436508	regulatory region 436508	1464 bp distal
Rr436509	regulatory region 436509	within coordinates
Tssr95006	transcription start site region 95006	1440 bp downstream
Tssr95007	transcription start site region 95007	1426 bp downstream
Tssr98789	transcription start site region 98789	1920 bp upstream
Tssr98790	transcription start site region 98790	1847 bp upstream
Tssr98791	transcription start site region 98791	1826 bp upstream
Ttc41	tetratricopeptide repeat domain 41	within coordinates