rs8258303 SNP Detail

Summary

• ID
  rs8258303
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:86542203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                               TGG GGGTAGCNCC CGGGTTTCCA CGTCCGCTTT
  Y
  TTGCGCGTCA CTCAGGGTNC CTAGAGCCTT CAGTTACACT TGGCNTTGCG CTGCTCGCAT
  TTCCTGTCCT CTCTGGTTTG GTTTGCAGTA GANGGTGGCA GGGGCTCTCC AACCCCGAAG
  GAAACAAGGA CCCAAGTTCC TTTGACATCC CCATAAATAT CAAAGAATGA CTGGGCAATC
  TAGAGCCTCT TTTGTGAATC AGCCAGAGAG CGCGGTGGTG AAGTCCAGGC TAGCATAGAA
  CAGGAAAGAA CTTATTTGCG CGTCACTCAG GGTNCCTAGA GCCTTCAGTT ACACTTGGCN
  TTGCGCTGCT CGCATTTCCT GTCCTCTCTG GTTTGGTTTG CAGTAGANGG TGGCAGGGGC
  TCTCCAACCC CGAAGGAAAC AAGGACCCAA GTTCCTTTGA CATCCCCATA AATATCAAAG
  AATGACTGGG CAATCTAGAG CCTCTTTTGT GAATCAGCCA GAGAGCGCGG TGGTGAAGTC
  CAGGCTAGCA TAGAACAGGA AAGAACTTAT GAGTTGTTTT TTTTTTTTAG GCAANCC   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	BALB/cJ	C57BL/6J	MRL/MpJ
ss12754601	AF091114_MC1137_1	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	BALB/cJ	C57BL/6J	MRL/MpJ
rs8258303					SNP	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86542203 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2068	CpG island 2068	within coordinates
Gm54730	predicted gene, 54730	891 bp upstream
Hsp90b1	heat shock protein 90, beta (Grp94), member 1	895 bp upstream
Rr436507	regulatory region 436507	1040 bp distal
Rr436508	regulatory region 436508	485 bp distal
Rr436509	regulatory region 436509	within coordinates
Tssr95006	transcription start site region 95006	461 bp downstream
Tssr95007	transcription start site region 95007	447 bp downstream
Tssr98788	transcription start site region 98788	1986 bp upstream
Tssr98789	transcription start site region 98789	941 bp upstream
Tssr98790	transcription start site region 98790	868 bp upstream
Tssr98791	transcription start site region 98791	847 bp upstream
Ttc41	tetratricopeptide repeat domain 41	within coordinates