rs8258304 SNP Detail

Summary

• ID
  rs8258304
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:86542222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCTT TCTTGCGCGT CACTCAGGGT
  Y
  CCTAGAGCCT TCAGTTACAC TTGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss12754602	AF091114_MC1137_2	ROCHEBIO	RPAMM	f	SNP	C		C	C		C	C		C	C	T	C				C			T
ss47925269	NES12039068	PERLEGEN	MM_PANEL2	f	SNP		C		C	C	C		C	C		T	C	T	C	C		C	T		C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs8258304					SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47925269	NES12039068	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86542222 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2068	CpG island 2068	within coordinates
Gm54730	predicted gene, 54730	910 bp upstream
Hsp90b1	heat shock protein 90, beta (Grp94), member 1	914 bp upstream
Rr436507	regulatory region 436507	1059 bp distal
Rr436508	regulatory region 436508	504 bp distal
Rr436509	regulatory region 436509	within coordinates
Tssr95006	transcription start site region 95006	480 bp downstream
Tssr95007	transcription start site region 95007	466 bp downstream
Tssr98789	transcription start site region 98789	960 bp upstream
Tssr98790	transcription start site region 98790	887 bp upstream
Tssr98791	transcription start site region 98791	866 bp upstream
Ttc41	tetratricopeptide repeat domain 41	within coordinates