rs8258305 SNP Detail

Summary

• ID
  rs8258305
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:86542248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGAATAGA TCTGTGCTTG
  TTCTAGGACT CTAATGCACA CAGTTTTCAG AGGCGGACCT GAAAAGCAGC CCCGCGTAGC
  CCTAGTCTCA CCGTGTCAGA GGGTCAGCCC TGGATTCTGG GCTGGTGGTA GCACCCGGGT
  TTCCACGTCC GCTTTCTTGC GCGTCACTCA GGGTCCCTAG AGCCTTCAGT TACACTTGGC
  K
  TTGCGCTGCT CGCATTTCCT GTCCTCTCTG GTTTGGTTTG CAGTAGAGGG TGGCAGGGGC
  TCTCCAACCC CGAAGGAAAC AAGGACCCAA GTTCCTTTGA CATCCCCATA AATATCAAAG
  AATGACTGGG CAATCTAGAG CCTCTTTTGT GAATCAGCCA GAGAGCGCGG TGGTGAAGTC
  CAGGCTAGCA TAGAACAGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
ss12754603	AF091114_MC1137_3	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
rs8258305					SNP	G	G	G	G	G	G	G	G	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86542248 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2068	CpG island 2068	within coordinates
Gm54730	predicted gene, 54730	936 bp upstream
Hsp90b1	heat shock protein 90, beta (Grp94), member 1	940 bp upstream
Rr436507	regulatory region 436507	1085 bp distal
Rr436508	regulatory region 436508	530 bp distal
Rr436509	regulatory region 436509	within coordinates
Tssr95006	transcription start site region 95006	506 bp downstream
Tssr95007	transcription start site region 95007	492 bp downstream
Tssr98789	transcription start site region 98789	986 bp upstream
Tssr98790	transcription start site region 98790	913 bp upstream
Tssr98791	transcription start site region 98791	892 bp upstream
Ttc41	tetratricopeptide repeat domain 41	within coordinates