rs8258306 SNP Detail

Summary

• ID
  rs8258306
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:86542296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                             TGGGGG
  TAGCNCCCGG GTTTCCACGT CCGCTTTNTT GCGCGTCACT CAGGGTNCCT AGAGCCTTCA
  GTTACACTTG GCNTTGCGCT GCTCGCATTT CCTGTCCTCT CTGGTTTGGT TTGCAGTAGA
  R
  GGTGGCAGGG GCTCTCCAAC CCCGAAGGAA ACAAGGACCC AAGTTCCTTT GACATCCCCA
  TAAATATCAA AGAATGACTG GGCAATCTAG AGCCTCTTTT GTGAATCAGC CAGAGAGCGC
  GGTGGTGAAG TCCAGGCTAG CATAGAACAG GAAAGAACTT ATGCAGATAC TTGAAAGCAA
  AAGCCGCAGA GCTTGCAAAA CAGCCTGGAT TGTGGCTTTG TAACTTCATA GAAACACCTT
  TCCNCCTTCC GAAAGATAGC AAAAGAGGCT CTTTCTGGTG AGGGAAGTCC CTAAGGCCAG
  CTTGTACGTT CCGAAANGTT TTNTAAGCTN TTTAGCCTCA TTTTAACCAA TTTTCCACCA
  GCCCGCTTGC CTGCCTNTAA CACATCCATT CCATCNCCGC TTTCTCCAAG AAAATTCGAG
  TTGTTTTTTT TTTTTAGGCA ANCC                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
ss12754604	AF091114_MC1137_4	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
rs8258306					SNP	G	G	G	G	G	G	G	G	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86542296 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2068	CpG island 2068	within coordinates
Gm54730	predicted gene, 54730	984 bp upstream
Hsp90b1	heat shock protein 90, beta (Grp94), member 1	988 bp upstream
Rr436507	regulatory region 436507	1133 bp distal
Rr436508	regulatory region 436508	578 bp distal
Rr436509	regulatory region 436509	within coordinates
Tssr95006	transcription start site region 95006	554 bp downstream
Tssr95007	transcription start site region 95007	540 bp downstream
Tssr98789	transcription start site region 98789	1034 bp upstream
Tssr98790	transcription start site region 98790	961 bp upstream
Tssr98791	transcription start site region 98791	940 bp upstream
Ttc41	tetratricopeptide repeat domain 41	within coordinates