rs8258307 SNP Detail

Summary

• ID
  rs8258307
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:86542540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TGGGGGTAGC
  NCCCGGGTTT CCACGTCCGC TTTNTTGCGC GTCACTCAGG GTNCCTAGAG CCTTCAGTTA
  CACTTGGCNT TGCGCTGCTC GCATTTCCTG TCCTCTCTGG TTTGGTTTGC AGTAGANGGT
  GGCAGGGGCT CTCCAACCCC GAAGGAAACA AGGACCCAAG TTCCTTTGAC ATCCCCATAA
  ATATCAAAGA ATGACTGGGC AATCTAGAGC CTCTTTTGTG AATCAGCCAG AGAGCGCGGT
  GGTGAAGTCC AGGCTAGCAT AGAACAGGAA AGAACTTATG CAGATACTTG AAAGCAAAAG
  CCGCAGAGCT TGCAAAACAG CCTGGATTGT GGCTTTGTAA CTTCATAGAA ACACCTTTCC
  S
  CCTTCCGAAA GATAGCAAAA GAGGCTCTTT CTGGTGAGGG AAGTCCCTAA GGCCAGCTTG
  TACGTTCCGA AANGTTTTNT AAGCTNTTTA GCCTCATTTT AACCAATTTT CCACCAGCCC
  GCTTGCCTGC CTNTAACACA TCCATTCCAT CNCCGCTTTC TCCAAGAAAA TTCGAGTTGT
  TTTTTTTTTT TAGGCAANCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cJ	C3H/HeJ	C57BL/6J	SPRET/EiJ
ss12754605	AF091114_MC1137_5	ROCHEBIO	RPAMM	f	SNP	C	C	G	G
SNP Consensus Information
SNP					Consensus Type	BALB/cJ	C3H/HeJ	C57BL/6J	SPRET/EiJ
rs8258307					SNP	C	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86542540 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2068	CpG island 2068	200 bp distal
Gm54730	predicted gene, 54730	1228 bp upstream
Hsp90b1	heat shock protein 90, beta (Grp94), member 1	1232 bp upstream
Rr436507	regulatory region 436507	1377 bp distal
Rr436508	regulatory region 436508	822 bp distal
Rr436509	regulatory region 436509	within coordinates
Tssr95006	transcription start site region 95006	798 bp downstream
Tssr95007	transcription start site region 95007	784 bp downstream
Tssr98789	transcription start site region 98789	1278 bp upstream
Tssr98790	transcription start site region 98790	1205 bp upstream
Tssr98791	transcription start site region 98791	1184 bp upstream
Ttc41	tetratricopeptide repeat domain 41	within coordinates