rs8258309 SNP Detail

Summary

• ID
  rs8258309
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:86542673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                          TGG GGGTAGCNCC CGGGTTTCCA
  CGTCCGCTTT NTTGCGCGTC ACTCAGGGTN CCTAGAGCCT TCAGTTACAC TTGGCNTTGC
  GCTGCTCGCA TTTCCTGTCC TCTCTGGTTT GGTTTGCAGT AGANGGTGGC AGGGGCTCTC
  CAACCCCGAA GGAAACAAGG ACCCAAGTTC CTTTGACATC CCCATAAATA TCAAAGAATG
  ACTGGGCAAT CTAGAGCCTC TTTTGTGAAT CAGCCAGAGA GCGCGGTGGT GAAGTCCAGG
  CTAGCATAGA ACAGGAAAGA ACTTATGCAG ATACTTGAAA GCAAAAGCCG CAGAGCTTGC
  AAAACAGCCT GGATTGTGGC TTTGTAACTT CATAGAAACA CCTTTCCNCC TTCCGAAAGA
  TAGCAAAAGA GGCTCTTTCT GGTGAGGGAA GTCCCTAAGG CCAGCTTGTA CGTTCCGAAA
  NGTTTTNTAA GCTNTTTAGC CTCATTTTAA CCAATTTTCC ACCAGCCCGC TTGCCTGCCT
  Y
  TAACACATCC ATTCCATCNC CGCTTTCTCC AAGAAAATTC GAGTTGTTTT TTTTTTTTAG
  GCAANCC                                                          
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	BALB/cByJ	BALB/cJ	C57BL/6J	DBA/2J	NZB/BlNJ	NZW/Lac
ss12754607	AF091114_MC1137_7	ROCHEBIO	RPAMM	f	SNP	C	T	C	T	T	C	C	C
ss24736563	AF091114_MC1137_8	ROCHEBIO	RPAMM	f	SNP	C	T	C	T	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	BALB/cByJ	BALB/cJ	C57BL/6J	DBA/2J	NZB/BlNJ	NZW/Lac
rs8258309					SNP	C	T	C	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86542673 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2068	CpG island 2068	333 bp distal
Gm54730	predicted gene, 54730	1361 bp upstream
Hsp90b1	heat shock protein 90, beta (Grp94), member 1	1365 bp upstream
Rr436507	regulatory region 436507	1510 bp distal
Rr436508	regulatory region 436508	955 bp distal
Rr436509	regulatory region 436509	within coordinates
Tssr95006	transcription start site region 95006	931 bp downstream
Tssr95007	transcription start site region 95007	917 bp downstream
Tssr98789	transcription start site region 98789	1411 bp upstream
Tssr98790	transcription start site region 98790	1338 bp upstream
Tssr98791	transcription start site region 98791	1317 bp upstream
Ttc41	tetratricopeptide repeat domain 41	within coordinates