rs8258812 SNP Detail

Summary

• ID
  rs8258812
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72760253 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CCCGT GACGCCCCTC CCCGGGGCAC
  Y
  AGGCGTGTTT GTCCGCTGAG CAGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	LG/J	NZW/Lac	SM/J	SPRET/EiJ
ss12755139	Abcd1_1_JC5689_1	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C		C		T
ss24757304	Abcd1_JC5689_1	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	LG/J	NZW/Lac	SM/J	SPRET/EiJ
rs8258812					SNP	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72760253 () rs orientation: reverse

Symbol	Name	Function Class
Abcd1	ATP-binding cassette, sub-family D member 1	within coordinates
Bcap31	B cell receptor associated protein 31	472 bp upstream
Cpgi22777	CpG island 22777	29 bp distal
Cpgi22778	CpG island 22778	412 bp proximal
Gm61833	predicted gene, 61833	965 bp downstream
Rr406105	regulatory region 406105	within coordinates
Rr691928	regulatory region 691928	483 bp distal
Rr691929	regulatory region 691929	952 bp distal
Rr691930	regulatory region 691930	710 bp distal
Rr691931	regulatory region 691931	within coordinates
Rr691932	regulatory region 691932	1802 bp proximal
Tssr161281	transcription start site region 161281	29 bp downstream
Tssr161282	transcription start site region 161282	65 bp upstream
Tssr161283	transcription start site region 161283	106 bp upstream
Tssr161284	transcription start site region 161284	139 bp upstream
Tssr161285	transcription start site region 161285	292 bp upstream
Tssr163562	transcription start site region 163562	460 bp upstream
Tssr163563	transcription start site region 163563	438 bp upstream
Tssr163564	transcription start site region 163564	181 bp upstream
Tssr163565	transcription start site region 163565	1183 bp downstream
Tssr163566	transcription start site region 163566	1203 bp downstream