rs8258813 SNP Detail

Summary

• ID
  rs8258813
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72761566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGCCATCG CTGGCCTGGT
  GGTGTTCCTC ACAGCCAACG TGCTTCGAGC CTTCTCTCCC AAGTTTGGGG AGCTAGTGGC
  AGAGGAGGCA CGGCGAAAGG GGGAACTGCG CTACATGCAC TCTCGAGTGG TGGCCAACTC
  AGAGGAAATT GCCTTCTACG GGGGCCATGA GGTGGGGCAG GTTGAGATGC TGCTTAAATA
  R
  CAGAGGAGGT GGCTGGGAGA CCTATTGCAG TCAGCTATAA GCAGTAAGGG AAGCCCAACA
  AGGCCTTCTC AGGCTGATGT TAAAGTTGTA GATAGACACT GGGACAAGCT TGGGGGTAGG
  CTTTGGATGG CTATAACCTT AAGATGCAGA AATGGAGAAA TGGCACCATT GGGTGGGAAC
  TTCCCTGTGC TGGCTGCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss12755140	Abcd1_1_JC5693_1	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G		G	G	G		A
ss24751668	Abcd1_JC5693_1	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs8258813					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72761566 () rs orientation: forward

Symbol	Name	Function Class
Abcd1	ATP-binding cassette, sub-family D member 1	within coordinates
Bcap31	B cell receptor associated protein 31	1785 bp upstream
Cpgi22777	CpG island 22777	1342 bp distal
Cpgi22778	CpG island 22778	545 bp distal
Gm61833	predicted gene, 61833	121 bp upstream
Rr406105	regulatory region 406105	1259 bp downstream
Rr691928	regulatory region 691928	1796 bp distal
Rr691931	regulatory region 691931	1210 bp distal
Rr691932	regulatory region 691932	489 bp proximal
Tssr161281	transcription start site region 161281	1342 bp downstream
Tssr161282	transcription start site region 161282	1210 bp downstream
Tssr161283	transcription start site region 161283	1181 bp downstream
Tssr161284	transcription start site region 161284	1161 bp downstream
Tssr161285	transcription start site region 161285	896 bp downstream
Tssr163562	transcription start site region 163562	1773 bp upstream
Tssr163563	transcription start site region 163563	1751 bp upstream
Tssr163564	transcription start site region 163564	1494 bp upstream
Tssr163565	transcription start site region 163565	118 bp upstream
Tssr163566	transcription start site region 163566	96 bp upstream