rs8258814 SNP Detail

Summary

• ID
  rs8258814
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72761597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCAACGT GCTTCGAGCC
  TTCTCTCCCA AGTTTGGGGA GCTAGTGGCA GAGGAGGCAC GGCGAAAGGG GGAACTGCGC
  TACATGCACT CTCGAGTGGT GGCCAACTCA GAGGAAATTG CCTTCTACGG GGGCCATGAG
  GTGGGGCAGG TTGAGATGCT GCTTAAATAG CAGAGGAGGT GGCTGGGAGA CCTATTGCAG
  Y
  CAGCTATAAG CAGTAAGGGA AGCCCAACAA GGCCTTCTCA GGCTGATGTT AAAGTTGTAG
  ATAGACACTG GGACAAGCTT GGGGGTAGGC TTTGGATGGC TATAACCTTA AGATGCAGAA
  ATGGAGAAAT GGCACCATTG GGTGGGAACT TCCCTGTGCT GGCTGCCTGC AACCTCCAAG
  CCACTTCTGC TTCCTTGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	SM/J	SPRET/EiJ
ss12755141	Abcd1_1_JC5693_2	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T		T	T		C
ss24751670	Abcd1_JC5693_3	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	SM/J	SPRET/EiJ
rs8258814					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72761597 () rs orientation: forward

Symbol	Name	Function Class
Abcd1	ATP-binding cassette, sub-family D member 1	within coordinates
Bcap31	B cell receptor associated protein 31	1816 bp upstream
Cpgi22777	CpG island 22777	1373 bp distal
Cpgi22778	CpG island 22778	576 bp distal
Gm61833	predicted gene, 61833	152 bp upstream
Rr406105	regulatory region 406105	1290 bp downstream
Rr691928	regulatory region 691928	1827 bp distal
Rr691931	regulatory region 691931	1241 bp distal
Rr691932	regulatory region 691932	458 bp proximal
Tssr161281	transcription start site region 161281	1373 bp downstream
Tssr161282	transcription start site region 161282	1241 bp downstream
Tssr161283	transcription start site region 161283	1212 bp downstream
Tssr161284	transcription start site region 161284	1192 bp downstream
Tssr161285	transcription start site region 161285	927 bp downstream
Tssr163562	transcription start site region 163562	1804 bp upstream
Tssr163563	transcription start site region 163563	1782 bp upstream
Tssr163564	transcription start site region 163564	1525 bp upstream
Tssr163565	transcription start site region 163565	149 bp upstream
Tssr163566	transcription start site region 163566	127 bp upstream