rs8258815 SNP Detail

Summary

• ID
  rs8258815
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72761679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAGA TAGACACTGG GACAAGCTTG
  S
  GGGTAGGCTT TGGATGGCTA TAACC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss12755143	Abcd1_1_JC5693_4	ROCHEBIO	RPAMM	f	SNP	G	C	C	C	G	C	C	C	G	G	C		C	G	G		G
ss24751672	Abcd1_JC5693_5	ROCHEBIO	RPAMM	f	SNP	G	C	C	C	G	C	C	C	G	G	C	C	C	G	G	C	G
ss46480557	mCV27568065	ABI	CRAMUS_MOUSE	f	SNP			C						G
ss134205580	ENSMUSSNP2588081	ENSEMBL	ENSEMBL_Sanger	f	SNP			C
ss325896505	CHEV_X_70963412	CHEVERUD	SCREENING_POP	f	SNP												C				G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs8258815					SNP	G	C	C	C	G	C	C	C	G	G	C	C	C	G	G	?	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72761679 () rs orientation: forward

Symbol	Name	Function Class
Abcd1	ATP-binding cassette, sub-family D member 1	within coordinates
Bcap31	B cell receptor associated protein 31	1898 bp upstream
Cpgi22777	CpG island 22777	1455 bp distal
Cpgi22778	CpG island 22778	658 bp distal
Gm61833	predicted gene, 61833	234 bp upstream
Rr406105	regulatory region 406105	1372 bp downstream
Rr691928	regulatory region 691928	1909 bp distal
Rr691931	regulatory region 691931	1323 bp distal
Rr691932	regulatory region 691932	376 bp proximal
Tssr161281	transcription start site region 161281	1455 bp downstream
Tssr161282	transcription start site region 161282	1323 bp downstream
Tssr161283	transcription start site region 161283	1294 bp downstream
Tssr161284	transcription start site region 161284	1274 bp downstream
Tssr161285	transcription start site region 161285	1009 bp downstream
Tssr163562	transcription start site region 163562	1886 bp upstream
Tssr163563	transcription start site region 163563	1864 bp upstream
Tssr163564	transcription start site region 163564	1607 bp upstream
Tssr163565	transcription start site region 163565	231 bp upstream
Tssr163566	transcription start site region 163566	209 bp upstream