rs8259022 SNP Detail

Summary

• ID
  rs8259022
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68597697 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CCTGC TTGGTCATTG ACTTGGAGCC
  K
  GCCATGTGTC TGGCTTCCCC CAGAC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12755384	S82412_AN611_3	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	G	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8259022					SNP	T	T	T	T	T	T	T	T	G	T	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68597697 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi13252	CpG island 13252	774 bp proximal
Gm66274	predicted gene, 66274	within coordinates
Il12a	interleukin 12a	280 bp upstream
Rr578059	regulatory region 578059	898 bp proximal
Tssr29479	transcription start site region 29479	965 bp upstream
Tssr29480	transcription start site region 29480	1003 bp upstream
Tssr29481	transcription start site region 29481	1008 bp upstream
Tssr29482	transcription start site region 29482	1066 bp upstream
Tssr29483	transcription start site region 29483	1132 bp upstream
Tssr29484	transcription start site region 29484	1263 bp upstream
Tssr29485	transcription start site region 29485	1560 bp upstream
Tssr29486	transcription start site region 29486	1581 bp upstream
Tssr29487	transcription start site region 29487	1691 bp upstream
Tssr29488	transcription start site region 29488	1709 bp upstream
Tssr33509	transcription start site region 33509	1840 bp downstream