rs8259024 SNP Detail

Summary

• ID
  rs8259024
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68597551 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TTCTG AAGTCCACTA AAGCCTGGAC
  R
  GAAGAGATCA GTGAGCACTT ACTCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SPRET/EiJ
ss12755386	S82412_AN611_5	ROCHEBIO	RPAMM	f	SNP	A		A			A	A	A		A	A	G	A				A		A	A			A
ss51541976	NES14683672	PERLEGEN	MM_PANEL2	r	SNP		T		T	T		T		T	T		C	T	T	T	T		T			T	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SPRET/EiJ
rs8259024					SNP	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51541976	NES14683672	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68597551 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi13252	CpG island 13252	920 bp proximal
Gm66274	predicted gene, 66274	within coordinates
Il12a	interleukin 12a	426 bp upstream
Rr578059	regulatory region 578059	1044 bp proximal
Tssr29479	transcription start site region 29479	1111 bp upstream
Tssr29480	transcription start site region 29480	1149 bp upstream
Tssr29481	transcription start site region 29481	1154 bp upstream
Tssr29482	transcription start site region 29482	1212 bp upstream
Tssr29483	transcription start site region 29483	1278 bp upstream
Tssr29484	transcription start site region 29484	1409 bp upstream
Tssr29485	transcription start site region 29485	1706 bp upstream
Tssr29486	transcription start site region 29486	1727 bp upstream
Tssr29487	transcription start site region 29487	1837 bp upstream
Tssr29488	transcription start site region 29488	1855 bp upstream
Tssr33509	transcription start site region 33509	1986 bp downstream