rs8259025 SNP Detail

Summary

• ID
  rs8259025
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68597518 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              CTTGGTCATT GACTTGGAGC
  CTGCCATGTG TCTGGCTTCC CCCAGACCCA TCCAGCTGTC AGAGCCCACC TCCTATTGAG
  GCAACCATCT CCATAACCAC AAGCCTTTGG GAGCACGGGA GAGAAGAGCC GGTGCCTCTT
  CCTTCTGAAG TCCACTAAAG CCTGGACAGA AGAGATCAGT GAGCACTTAC TCAGCAGGGT
  S
  GACCTCTGTT GAAAAGGGCG AAGCCAAGCC AATAAGAAGG ACACCATAGC AGCTCTGATC
  AGTGAGGTCC CTGTGGCTGT GAACTGGGGA CAAGGGACAA TGGATGATTA GAATTACTGA
  TGTCGTAATA GTTTATGTAG AGCTGTGCTT GCCCAGGAGG TTACAATGAA GCTCATTTAA
  GGGAGCTGTT CCTTTCCTAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12755387	S82412_AN611_6	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8259025					SNP	G	G	G	G	G	G	G	G	G	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68597518 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi13252	CpG island 13252	953 bp proximal
Gm66274	predicted gene, 66274	within coordinates
Il12a	interleukin 12a	459 bp upstream
Rr578059	regulatory region 578059	1077 bp proximal
Tssr29479	transcription start site region 29479	1144 bp upstream
Tssr29480	transcription start site region 29480	1182 bp upstream
Tssr29481	transcription start site region 29481	1187 bp upstream
Tssr29482	transcription start site region 29482	1245 bp upstream
Tssr29483	transcription start site region 29483	1311 bp upstream
Tssr29484	transcription start site region 29484	1442 bp upstream
Tssr29485	transcription start site region 29485	1739 bp upstream
Tssr29486	transcription start site region 29486	1760 bp upstream
Tssr29487	transcription start site region 29487	1870 bp upstream
Tssr29488	transcription start site region 29488	1888 bp upstream