rs8259026 SNP Detail

Summary

• ID
  rs8259026
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68597498 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AGGGT GGACCTCTGT TGAAAAGGGC
  R
  AAGCCAAGCC AATAAGAAGG ACACC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SPRET/EiJ
ss12755388	S82412_AN611_7	ROCHEBIO	RPAMM	f	SNP		G			G	G		G	G	A	G				G		G			A
ss51541979	NES14683671	PERLEGEN	MM_PANEL2	r	SNP	C		C	C		C	C	C		T	C	C	C	C		C		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SPRET/EiJ
rs8259026					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51541979	NES14683671	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68597498 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi13252	CpG island 13252	973 bp proximal
Gm66274	predicted gene, 66274	within coordinates
Il12a	interleukin 12a	479 bp upstream
Rr578059	regulatory region 578059	1097 bp proximal
Tssr29479	transcription start site region 29479	1164 bp upstream
Tssr29480	transcription start site region 29480	1202 bp upstream
Tssr29481	transcription start site region 29481	1207 bp upstream
Tssr29482	transcription start site region 29482	1265 bp upstream
Tssr29483	transcription start site region 29483	1331 bp upstream
Tssr29484	transcription start site region 29484	1462 bp upstream
Tssr29485	transcription start site region 29485	1759 bp upstream
Tssr29486	transcription start site region 29486	1780 bp upstream
Tssr29487	transcription start site region 29487	1890 bp upstream
Tssr29488	transcription start site region 29488	1908 bp upstream