rs8259032 SNP Detail

Summary

• ID
  rs8259032
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68598391 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              TTGTCCCGGG ACAGGTCTGT
  CCTGCCCCAC TACCCCCTAG CCCTAACACG CTGCCCAGTG CCCCTTCTAA AGAAGCACAA
  GCTACCCACT CGTCTCTCCA TCGTGGACAC TGAGTCTGAC TCAATGTATT TTGCGAATCT
  GTCCTACTTT GAAAGTATAA AGGAACAAAA TAGATGTGGT GGCTATATAT CGCTTAAAAC
  W
  CAGTTCTGGC AGTTTTGATT TAGTGAGACG ACTGCACAGC ATCTTGGGGG AAAAGGGCCC
  AGAGAGAGCA AGGCCATCTC TCTGCAGGAG CCTAAGAGGC AGCAAAGGCT CCTGAAGCCT
  CCAGATCTGC AAGAAGGCAT TGCCTGGCTG CCAGTGGGAT GCATTCTGAG CTAGTTTTGG
  AAATGGGAAT CAACACAGTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12755394	S82412_AN613_1	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8259032					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68598391 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi13252	CpG island 13252	80 bp proximal
Gm66274	predicted gene, 66274	189 bp upstream
Il12a	interleukin 12a	within coordinates
Rr578059	regulatory region 578059	204 bp proximal
Rr578060	regulatory region 578060	1507 bp proximal
Tssr29479	transcription start site region 29479	271 bp upstream
Tssr29480	transcription start site region 29480	309 bp upstream
Tssr29481	transcription start site region 29481	314 bp upstream
Tssr29482	transcription start site region 29482	372 bp upstream
Tssr29483	transcription start site region 29483	438 bp upstream
Tssr29484	transcription start site region 29484	569 bp upstream
Tssr29485	transcription start site region 29485	866 bp upstream
Tssr29486	transcription start site region 29486	887 bp upstream
Tssr29487	transcription start site region 29487	997 bp upstream
Tssr29488	transcription start site region 29488	1015 bp upstream
Tssr33509	transcription start site region 33509	1146 bp downstream