rs8259036 SNP Detail

Summary

• ID
  rs8259036
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68598286 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                 G TATAAAGGAA CAAAATAGAT GTGGTGGCTA
  TATATCGCTT AAAACNCAGT TCTGGCAGTT TTGATTTAGT GNGACGANTG CACAGCATCT
  TGGGNGAAAA GGGCCCAGAG AGAGCAAGGC CATCTCTCTG CAGGAGCCTA AGAGGCAGCA
  W
  AGGCTCCTGN AAGCCTCCAG ATCTGCAAGA AGGCATTGCC TGGCTGCCAG TGGGATGCAT
  TCTGAGCTAG TTTTGGAAAT GGGAATCAAC ACANTAGGGA GGCAGAGGGC AGATGGGAAC
  NGAGCGNGTT GCAAGTTGTG ATACTGGTGG GGATATATCT GGTCATTGC            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12755398	S82412_AN613_5	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8259036					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68598286 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi13252	CpG island 13252	185 bp proximal
Gm66274	predicted gene, 66274	84 bp upstream
Il12a	interleukin 12a	within coordinates
Rr578059	regulatory region 578059	309 bp proximal
Rr578060	regulatory region 578060	1612 bp proximal
Tssr29479	transcription start site region 29479	376 bp upstream
Tssr29480	transcription start site region 29480	414 bp upstream
Tssr29481	transcription start site region 29481	419 bp upstream
Tssr29482	transcription start site region 29482	477 bp upstream
Tssr29483	transcription start site region 29483	543 bp upstream
Tssr29484	transcription start site region 29484	674 bp upstream
Tssr29485	transcription start site region 29485	971 bp upstream
Tssr29486	transcription start site region 29486	992 bp upstream
Tssr29487	transcription start site region 29487	1102 bp upstream
Tssr29488	transcription start site region 29488	1120 bp upstream
Tssr33509	transcription start site region 33509	1251 bp downstream