rs8259038 SNP Detail

Summary

• ID
  rs8259038
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68598193 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AGTTT TGGAAATGGG AATCAACACA
  R
  TAGGGAGGCA GAGGGCAGAT GGGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12755400	S82412_AN613_7	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8259038					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68598193 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi13252	CpG island 13252	278 bp proximal
Gm66274	predicted gene, 66274	within coordinates
Il12a	interleukin 12a	within coordinates
Rr578059	regulatory region 578059	402 bp proximal
Rr578060	regulatory region 578060	1705 bp proximal
Tssr29479	transcription start site region 29479	469 bp upstream
Tssr29480	transcription start site region 29480	507 bp upstream
Tssr29481	transcription start site region 29481	512 bp upstream
Tssr29482	transcription start site region 29482	570 bp upstream
Tssr29483	transcription start site region 29483	636 bp upstream
Tssr29484	transcription start site region 29484	767 bp upstream
Tssr29485	transcription start site region 29485	1064 bp upstream
Tssr29486	transcription start site region 29486	1085 bp upstream
Tssr29487	transcription start site region 29487	1195 bp upstream
Tssr29488	transcription start site region 29488	1213 bp upstream
Tssr33509	transcription start site region 33509	1344 bp downstream