rs8259040 SNP Detail

Summary

• ID
  rs8259040
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68598160 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GCAGA GGGCAGATGG GAACGGAGCG
  M
  GTTGCAAGTT GTGATACTGG TGGGG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss12755402	S82412_AN613_9	ROCHEBIO	RPAMM	f	SNP	A			C	C	C	C	C	C		C	C	C	C				C		C	C			C
ss45459853	mCV23066315	ABI	CRAMUS_MOUSE	r	SNP			T		G							G
ss51541967	NES14683675	PERLEGEN	MM_PANEL2	r	SNP		T			G	G		G		G	G		G	G	G	G	G		G			G	G		G
ss135264190	ENSMUSSNP5025980	ENSEMBL	ENSEMBL_Sanger	r	SNP			T		G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs8259040					SNP	A	A	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51541967	NES14683675	PERLEGEN	MM_PANEL	r	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68598160 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi13252	CpG island 13252	311 bp proximal
Gm66274	predicted gene, 66274	within coordinates
Il12a	interleukin 12a	within coordinates
Rr578059	regulatory region 578059	435 bp proximal
Rr578060	regulatory region 578060	1738 bp proximal
Tssr29479	transcription start site region 29479	502 bp upstream
Tssr29480	transcription start site region 29480	540 bp upstream
Tssr29481	transcription start site region 29481	545 bp upstream
Tssr29482	transcription start site region 29482	603 bp upstream
Tssr29483	transcription start site region 29483	669 bp upstream
Tssr29484	transcription start site region 29484	800 bp upstream
Tssr29485	transcription start site region 29485	1097 bp upstream
Tssr29486	transcription start site region 29486	1118 bp upstream
Tssr29487	transcription start site region 29487	1228 bp upstream
Tssr29488	transcription start site region 29488	1246 bp upstream
Tssr33509	transcription start site region 33509	1377 bp downstream