rs8259046 SNP Detail

Summary

• ID
  rs8259046
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68598939 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GTCTG TTCTTTCTCA AGCCTTCTCC
  Y
  CTCATCAAGT CACCCTGGTC CCGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12755408	S82412_AN615_2	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8259046					SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68598939 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi13252	CpG island 13252	156 bp distal
Gm66274	predicted gene, 66274	737 bp upstream
Il12a	interleukin 12a	within coordinates
Rr578059	regulatory region 578059	244 bp distal
Rr578060	regulatory region 578060	959 bp proximal
Tssr29479	transcription start site region 29479	243 bp downstream
Tssr29480	transcription start site region 29480	236 bp downstream
Tssr29481	transcription start site region 29481	195 bp downstream
Tssr29482	transcription start site region 29482	168 bp downstream
Tssr29483	transcription start site region 29483	95 bp downstream
Tssr29484	transcription start site region 29484	21 bp upstream
Tssr29485	transcription start site region 29485	318 bp upstream
Tssr29486	transcription start site region 29486	339 bp upstream
Tssr29487	transcription start site region 29487	449 bp upstream
Tssr29488	transcription start site region 29488	467 bp upstream
Tssr33509	transcription start site region 33509	598 bp downstream