rs8259047 SNP Detail

Summary

• ID
  rs8259047
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68598936 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              GGGCTTTAGT TCTCTTCTGT
  GAAACGGGCA TAGCCGTAGC CCCCAGGGTT GTTCTATAAT GAGACCATGC TCGGTGCAGC
  GCAATCTAGC ACGACCATCT TTCCCCTCTT CCTTCCCTTG GCCTGCAGTT GCTGGCAGCC
  CTTTAGTCTC CCTTAATGGG TCCAGGGCTT CTGTCTGTTC TTTCTCAAGC CTTCTCCTCT
  S
  ATCAAGTCAC CCTGGTCCCG GCCCTCAGGT ACTTACAGCG TGATTGACAC ATGCTGGACC
  GGCACTGAGA GGAGCTGCTG GATGCCGAGG GTGAGGCTGT TGGAACGCTG ACCTTGGGAG
  ACACATTTTT ATAATTGTCT GGATAGCCGG CAGGACTTTC CCAGGACTGT GTCTCTTGCT
  TTCTCTCTCT GTCTCTACAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12755409	S82412_AN615_3	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	G	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8259047					SNP	C	C	C	C	C	C	C	C	G	C	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68598936 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi13252	CpG island 13252	153 bp distal
Gm66274	predicted gene, 66274	734 bp upstream
Il12a	interleukin 12a	within coordinates
Rr578059	regulatory region 578059	241 bp distal
Rr578060	regulatory region 578060	962 bp proximal
Tssr29479	transcription start site region 29479	240 bp downstream
Tssr29480	transcription start site region 29480	233 bp downstream
Tssr29481	transcription start site region 29481	192 bp downstream
Tssr29482	transcription start site region 29482	165 bp downstream
Tssr29483	transcription start site region 29483	92 bp downstream
Tssr29484	transcription start site region 29484	24 bp upstream
Tssr29485	transcription start site region 29485	321 bp upstream
Tssr29486	transcription start site region 29486	342 bp upstream
Tssr29487	transcription start site region 29487	452 bp upstream
Tssr29488	transcription start site region 29488	470 bp upstream
Tssr33509	transcription start site region 33509	601 bp downstream