rs8259380 SNP Detail

Summary

• ID
  rs8259380
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172153853 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TCGCC TACGGCCGCG GCGACCTGGA
  R
  CACCTGGAGG ACACCGCGTG GACCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss12755742	U11860_BS103_2	ROCHEBIO	RPAMM	f	SNP	G			G	G	G	A	G	G		G	A	G	G					G		G	G				G
ss45055377	mCV24595303	ABI	CRAMUS_MOUSE	r	SNP			C		C									C
ss49752232	NES13029270	PERLEGEN	MM_PANEL2	r	SNP		C			C	C		C		T	C		C	C	C	C		T		C			C	C			C
ss120009181	PARCsnp_1.18669	PARC_SEQ	INBRED	r	SNP												T		C
ss120012382	PARCsnp_1.08458	PARC_SEQ	INBRED	r	SNP												T		C
ss146187980	ENSMUSSNP2099675	ENSEMBL	ENSEMBL_Sanger	r	SNP					C									C
ss320124224	CHEV_1_174256417	CHEVERUD	SCREENING_POP	r	SNP																	T								C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs8259380					SNP	G	G	G	G	G	G	A	G	G	A	G	A	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752232	NES13029270	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172153853 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi1043	CpG island 1043	within coordinates
Gm70847	predicted gene, 70847	within coordinates
Kcnj9	potassium inwardly-rectifying channel, subfamily J, member 9	within coordinates
Rr423524	regulatory region 423524	906 bp distal
Rr423525	regulatory region 423525	1360 bp distal
Rr423526	regulatory region 423526	1170 bp distal
Rr423527	regulatory region 423527	within coordinates
Rr423528	regulatory region 423528	368 bp distal
Rr423529	regulatory region 423529	26 bp proximal
Rr423530	regulatory region 423530	553 bp proximal
Rr423531	regulatory region 423531	1932 bp proximal
Tssr15210	transcription start site region 15210	61 bp upstream
Tssr15211	transcription start site region 15211	48 bp upstream
Tssr15212	transcription start site region 15212	31 bp upstream