rs8259382 SNP Detail

Summary

• ID
  rs8259382
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172153505 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CGCAC ATCGTCGAGG CCTCCATCCG
  M
  GCCAAGCTCA TCCGCTCCCG TCAGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss12755744	U11860_BS105_1	ROCHEBIO	RPAMM	f	SNP	A			A					C	C	A					A		A				C
ss45174865	mCV24595314	ABI	CRAMUS_MOUSE	r	SNP			T	T					G		T
ss49752236	NES13029267	PERLEGEN	MM_PANEL2	r	SNP		T		T	T	T	G	T		G	T	T	T		G		T		T	T			T
ss120009176	PARCsnp_1.18666	PARC_SEQ	INBRED	r	SNP									G		T
ss120012376	PARCsnp_1.08455	PARC_SEQ	INBRED	r	SNP									G		T
ss146187968	ENSMUSSNP6626400	ENSEMBL	ENSEMBL_Sanger	r	SNP			T	T							T
ss320124221	CHEV_1_174256069	CHEVERUD	SCREENING_POP	r	SNP														T							T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs8259382					SNP	A	A	A	A	A	A	C	A	C	C	A	A	A	A	C	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752236	NES13029267	PERLEGEN	MM_PANEL	r	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172153505 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi1043	CpG island 1043	within coordinates
Gm70847	predicted gene, 70847	342 bp upstream
Kcnj9	potassium inwardly-rectifying channel, subfamily J, member 9	within coordinates
Rr423524	regulatory region 423524	558 bp distal
Rr423525	regulatory region 423525	1012 bp distal
Rr423526	regulatory region 423526	822 bp distal
Rr423527	regulatory region 423527	within coordinates
Rr423528	regulatory region 423528	20 bp distal
Rr423529	regulatory region 423529	374 bp proximal
Rr423530	regulatory region 423530	901 bp proximal
Tssr15210	transcription start site region 15210	280 bp downstream
Tssr15211	transcription start site region 15211	290 bp downstream
Tssr15212	transcription start site region 15212	310 bp downstream