rs8259383 SNP Detail

Summary

• ID
  rs8259383
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172153373 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TCTCA CCTCTCGTCA TCAGCCACGA
  R
  ATCGATGCCG CCAGCCCCTT CTGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss12755745	U11860_BS105_2	ROCHEBIO	RPAMM	f	SNP	A		A					A		A					A			G
ss49752237	NES13029266	PERLEGEN	MM_PANEL2	r	SNP		T	T	T	T	T	T		C	T	T	T	T	T		T	T		T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs8259383					SNP	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752237	NES13029266	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172153373 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi1043	CpG island 1043	within coordinates
Gm70847	predicted gene, 70847	474 bp upstream
Kcnj9	potassium inwardly-rectifying channel, subfamily J, member 9	Coding-Synonymous
Rr423524	regulatory region 423524	426 bp distal
Rr423525	regulatory region 423525	880 bp distal
Rr423526	regulatory region 423526	690 bp distal
Rr423527	regulatory region 423527	within coordinates
Rr423528	regulatory region 423528	91 bp proximal
Rr423529	regulatory region 423529	506 bp proximal
Rr423530	regulatory region 423530	1033 bp proximal
Tssr15210	transcription start site region 15210	412 bp downstream
Tssr15211	transcription start site region 15211	422 bp downstream
Tssr15212	transcription start site region 15212	442 bp downstream