rs8259688 SNP Detail

Summary

• ID
  rs8259688
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:107847951 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAACTCA AGATGAAGTC
  TTCCACAGGA GCAGCCCTGA GTCACAGTAC TTCACAGGTC AGCCACAGGA CTGACAACAC
  CAATCAAATA TTACCATGGA GTATGTCTTG GTCCTGCACA TCAGTCTGCC TTTCTCTCAG
  CCTAACGGTT GCAGGAACAA ACACATTCTT CACATAATCT GCATACTGCA GGTCCTGGGC
  Y
  GGAAACCCAA GCTGTTTAAA GGCCTGACTT TCTTTTTGGC ACAAATCAGG AAGAGACACT
  GAATGTTGCT CTTAGAAGCC AAAAGCAGTT GGGAGCCCAG AACAGCCTCT ACTCGTGCTA
  GGATGCTGAG CAAGTAGCTT ACCCTACACA GTCTCGTGTT CCTTATCTGT TCATCGTGAC
  AGCTAATTCT ACCCAGGTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	SPRET/EiJ	WSB/EiJ
ss12756076	Gstm6_2_AN4436_2	ROCHEBIO	RPAMM	f	SNP	C		C	C	C	C	C	C			C	T	C				C		C	C		C
ss46860495	NES10716362	PERLEGEN	MM_PANEL2	f	SNP		C		C	C		C		C	C		T	C	C	C	C		C			C		C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	SPRET/EiJ	WSB/EiJ
rs8259688					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46860495	NES10716362	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107847951 () rs orientation: forward

Symbol	Name	Function Class
Gstm6	glutathione S-transferase, mu 6	Intron
Rr583091	regulatory region 583091	760 bp distal