rs8259689 SNP Detail

Summary

• ID
  rs8259689
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:107848065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACATCAG TCTGCCTTTC
  TCTCAGCCTA ACGGTTGCAG GAACAAACAC ATTCTTCACA TAATCTGCAT ACTGCAGGTC
  CTGGGCCGGA AACCCAAGCT GTTTAAAGGC CTGACTTTCT TTTTGGCACA AATCAGGAAG
  AGACACTGAA TGTTGCTCTT AGAAGCCAAA AGCAGTTGGG AGCCCAGAAC AGCCTCTACT
  Y
  GTGCTAGGAT GCTGAGCAAG TAGCTTACCC TACACAGTCT CGTGTTCCTT ATCTGTTCAT
  CGTGACAGCT AATTCTACCC AGGTTGCCTG CGTGTGGCAA TGACAAATTG ACTCCGCAGA
  TCTAGAAGGC TGAACATGGG TCCTGGCAGA AAGTCAGTGC TCAATAGATC AGAACTAGGG
  AAGCAACCTG GAAAGGGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12756077	Gstm6_2_AN4436_3	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8259689					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107848065 () rs orientation: forward

Symbol	Name	Function Class
Gstm6	glutathione S-transferase, mu 6	Intron
Rr583091	regulatory region 583091	874 bp distal