rs8259754 SNP Detail

Summary

• ID
  rs8259754
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:87193617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGCTTGG GAAATGGAAT
  TGAACCAAGC CTCAAGCCAC CATCTGTATC ATACAAAGTA AGGCCTAGAA AATAATTCTC
  ACAGGATAAC ACCAGACCTG TTGCTCAGAA TCTGTGCCGC CATCTCCCGA TACCCAAACT
  ATCCTTACTC TATAGGAATC TTTTTCTTTG AAAATCACGC TTTGGGAAAA TTATGTTCTA
  S
  GAATTTACTA ATTTCTCAGC CAAGTTCAAA GAACCTCTGA GTATCACCAT TTTAAAGCCA
  GGTGACTAGA AGACATGAGG ACAACTCCTG CAAACTCCGA GTGTGGGACC CCCACCAGGG
  CAAACCTATT CTCCGAGGTT TGACACACCG GAAAGCTTTC CCCAGCCACC CCCTACTCCC
  CTCGAAATAC AACTGAGTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12756146	Gstz1_1_AN4450_7	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8259754					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:87193617 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4937	CpG island 4937	124 bp proximal
Gstz1	glutathione transferase zeta 1 (maleylacetoacetate isomerase)	322 bp upstream
Pomt2	protein-O-mannosyltransferase 2	within coordinates
Rr403429	regulatory region 403429	137 bp upstream
Rr403430	regulatory region 403430	680 bp upstream
Rr470321	regulatory region 470321	within coordinates
Rr470322	regulatory region 470322	260 bp proximal
Rr470323	regulatory region 470323	385 bp proximal
Rr470324	regulatory region 470324	642 bp proximal
Rr470325	regulatory region 470325	1049 bp proximal
Tssr114506	transcription start site region 114506	306 bp upstream
Tssr114507	transcription start site region 114507	860 bp upstream
Tssr114508	transcription start site region 114508	942 bp upstream
Tssr114509	transcription start site region 114509	1127 bp upstream
Tssr117156	transcription start site region 117156	575 bp downstream
Tssr117157	transcription start site region 117157	641 bp downstream
Tssr117158	transcription start site region 117158	1040 bp downstream