rs8259756 SNP Detail

Summary

• ID
  rs8259756
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:87193634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTGAACCA AGCCTCAAGC
  CACCATCTGT ATCATACAAA GTAAGGCCTA GAAAATAATT CTCACAGGAT AACACCAGAC
  CTGTTGCTCA GAATCTGTGC CGCCATCTCC CGATACCCAA ACTATCCTTA CTCTATAGGA
  ATCTTTTTCT TTGAAAATCA CGCTTTGGGA AAATTATGTT CTACGAATTT ACTAATTTCT
  S
  AGCCAAGTTC AAAGAACCTC TGAGTATCAC CATTTTAAAG CCAGGTGACT AGAAGACATG
  AGGACAACTC CTGCAAACTC CGAGTGTGGG ACCCCCACCA GGGCAAACCT ATTCTCCGAG
  GTTTGACACA CCGGAAAGCT TTCCCCAGCC ACCCCCTACT CCCCTCGAAA TACAACTGAG
  TTTCTCTACC GCCAAGGACC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss12756148	Gstz1_1_AN4450_9	ROCHEBIO	RPAMM	f	SNP	C		C	C	C	C	C		C	C	G	C				C		C	C			G
ss52451854	NES15431690	PERLEGEN	MM_PANEL2	f	SNP		C		C	C		C	C	C			C	C	C	G		G			C	G		G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs8259756					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	C	G	C	G	C	C	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52451854	NES15431690	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:87193634 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4937	CpG island 4937	107 bp proximal
Gstz1	glutathione transferase zeta 1 (maleylacetoacetate isomerase)	305 bp upstream
Pomt2	protein-O-mannosyltransferase 2	within coordinates
Rr403429	regulatory region 403429	120 bp upstream
Rr403430	regulatory region 403430	663 bp upstream
Rr470321	regulatory region 470321	within coordinates
Rr470322	regulatory region 470322	243 bp proximal
Rr470323	regulatory region 470323	368 bp proximal
Rr470324	regulatory region 470324	625 bp proximal
Rr470325	regulatory region 470325	1032 bp proximal
Tssr114506	transcription start site region 114506	289 bp upstream
Tssr114507	transcription start site region 114507	843 bp upstream
Tssr114508	transcription start site region 114508	925 bp upstream
Tssr114509	transcription start site region 114509	1110 bp upstream
Tssr117156	transcription start site region 117156	558 bp downstream
Tssr117157	transcription start site region 117157	624 bp downstream
Tssr117158	transcription start site region 117158	1023 bp downstream