rs8259758 SNP Detail

Summary

• ID
  rs8259758
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:87193774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTTTTCT TTGAAAATCA
  CGCTTTGGGA AAATTATGTT CTACGAATTT ACTAATTTCT CAGCCAAGTT CAAAGAACCT
  CTGAGTATCA CCATTTTAAA GCCAGGTGAC TAGAAGACAT GAGGACAACT CCTGCAAACT
  CCGAGTGTGG GACCCCCACC AGGGCAAACC TATTCTCCGA GGTTTGACAC ACCGGAAAGC
  K
  TTCCCCAGCC ACCCCCTACT CCCCTCGAAA TACAACTGAG TTTCTCTACC GCCAAGGACC
  TGTCGTGCCT CCGATGAATC CCGCCCACTT CGCGCCCTCA AGCCAATCAG AGGGTGGCGT
  CACTCCCTCT CAGTTGCCAT GGTGCCCGCC AAGTCCTTTC CGCCACTTAC CAGATGTGAG
  CAGGCTGGTC CAGCCGGTGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12756150	Gstz1_1_AN4450_11	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8259758					SNP	T	T	T	T	T	T	T	T	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:87193774 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4937	CpG island 4937	within coordinates
Gstz1	glutathione transferase zeta 1 (maleylacetoacetate isomerase)	165 bp upstream
Pomt2	protein-O-mannosyltransferase 2	within coordinates
Rr403429	regulatory region 403429	within coordinates
Rr403430	regulatory region 403430	523 bp upstream
Rr470321	regulatory region 470321	within coordinates
Rr470322	regulatory region 470322	103 bp proximal
Rr470323	regulatory region 470323	228 bp proximal
Rr470324	regulatory region 470324	485 bp proximal
Rr470325	regulatory region 470325	892 bp proximal
Tssr114506	transcription start site region 114506	149 bp upstream
Tssr114507	transcription start site region 114507	703 bp upstream
Tssr114508	transcription start site region 114508	785 bp upstream
Tssr114509	transcription start site region 114509	970 bp upstream
Tssr117156	transcription start site region 117156	418 bp downstream
Tssr117157	transcription start site region 117157	484 bp downstream
Tssr117158	transcription start site region 117158	883 bp downstream