rs8259759 SNP Detail

Summary

• ID
  rs8259759
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:87194373 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TCTAC GCCTCAGGCC GCCTCTTAGC
  Y
  GCCCGGGCGG CCACCACACT TTCCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	BALB/cByJ	C3H/HeJ	C57BL/6J	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
ss12756151	Gstz1_1_AN4451_2	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	BALB/cByJ	C3H/HeJ	C57BL/6J	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
rs8259759					SNP	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:87194373 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi4937	CpG island 4937	within coordinates
Gm6566	predicted gene 6566	1876 bp downstream
Gstz1	glutathione transferase zeta 1 (maleylacetoacetate isomerase)	within coordinates
Pomt2	protein-O-mannosyltransferase 2	within coordinates
Rr403429	regulatory region 403429	319 bp downstream
Rr403430	regulatory region 403430	within coordinates
Rr470321	regulatory region 470321	424 bp distal
Rr470322	regulatory region 470322	475 bp distal
Rr470323	regulatory region 470323	within coordinates
Rr470324	regulatory region 470324	93 bp distal
Rr470325	regulatory region 470325	293 bp proximal
Tssr114506	transcription start site region 114506	398 bp downstream
Tssr114507	transcription start site region 114507	104 bp upstream
Tssr114508	transcription start site region 114508	186 bp upstream
Tssr114509	transcription start site region 114509	371 bp upstream
Tssr117156	transcription start site region 117156	123 bp upstream
Tssr117157	transcription start site region 117157	104 bp upstream
Tssr117158	transcription start site region 117158	284 bp downstream