rs8259908 SNP Detail

Summary

• ID
  rs8259908
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:87843238 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                   NCGA TTTTGAAAAC TCTTGAACAT CAGTTTTATT TTACTCTGTA
  W
  TCCATCCATA AGTAGAATAG GTTAGGNGAC ACTCCTTAAG AACACTTATT TTCTTCATGT
  TACCCTAGAC AATGCTTTCT TGCTTTGTGT ATCTTTAAAA AAAAAGGGCC TTAATCTGTA
  CCCCAGGATT GCCTAGAATT TACCTTTTAT TTCAGGGTGT TCTCAAAGTT ATAGTAATNC
  TTCTGCATCA GACTTCAACC TGCTAGATTT AAAGCCATTA ATTANNGTAT TCACCTAGGA
  CATGGTAGAT TTTTAAGCAA ATGAAGGTTT TTGTAGTTNT CCATTC               
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C57BL/6J	NZB/BlNJ	SPRET/EiJ
ss12756314	M26940_157_1	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	A/HeJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C57BL/6J	NZB/BlNJ	SPRET/EiJ
rs8259908					SNP	A	A	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:87843238 () rs orientation: reverse

Symbol	Name	Function Class
Csn2	casein beta	within coordinates
D5Mit12	DNA segment, Chr 5, Massachusetts Institute of Technology 12	1401 bp distal
D5Mit16	DNA segment, Chr 5, Massachusetts Institute of Technology 16	1361 bp distal
D5Mit16.1	DNA segment, Chr 5, Massachusetts Institute of Technology 16.1	1204 bp distal
D5Mit16.2	DNA segment, Chr 5, Massachusetts Institute of Technology 16.2	1516 bp distal
Tssr1529	transcription start site region 1529	818 bp downstream
Tssr46883	transcription start site region 46883	868 bp downstream
Tssr46884	transcription start site region 46884	853 bp downstream
Tssr46885	transcription start site region 46885	832 bp downstream
Tssr46886	transcription start site region 46886	802 bp downstream
Tssr46887	transcription start site region 46887	785 bp downstream
Tssr46888	transcription start site region 46888	679 bp downstream
Tssr46889	transcription start site region 46889	660 bp downstream
Tssr46890	transcription start site region 46890	627 bp downstream
Tssr46891	transcription start site region 46891	614 bp downstream
Tssr46892	transcription start site region 46892	585 bp downstream
Tssr46893	transcription start site region 46893	559 bp downstream
Tssr46894	transcription start site region 46894	514 bp downstream
Tssr46895	transcription start site region 46895	494 bp downstream
Tssr46896	transcription start site region 46896	415 bp downstream
Tssr51618	transcription start site region 51618	839 bp upstream
Tssr51619	transcription start site region 51619	805 bp upstream
Tssr51620	transcription start site region 51620	795 bp upstream
Tssr51621	transcription start site region 51621	776 bp upstream
Tssr51622	transcription start site region 51622	740 bp upstream
Tssr51623	transcription start site region 51623	724 bp upstream
Tssr51624	transcription start site region 51624	707 bp upstream
Tssr51625	transcription start site region 51625	697 bp upstream
Tssr51626	transcription start site region 51626	685 bp upstream
Tssr51627	transcription start site region 51627	659 bp upstream
Tssr51628	transcription start site region 51628	549 bp upstream
Tssr51629	transcription start site region 51629	455 bp upstream
Tssr51630	transcription start site region 51630	407 bp upstream
Tssr51631	transcription start site region 51631	368 bp upstream
Tssr51632	transcription start site region 51632	109 bp upstream
Tssr51633	transcription start site region 51633	674 bp downstream
Tssr51634	transcription start site region 51634	796 bp downstream
Tssr51635	transcription start site region 51635	1760 bp downstream
Tssr51636	transcription start site region 51636	1786 bp downstream
Tssr51637	transcription start site region 51637	1899 bp downstream