rs8259909 SNP Detail

Summary

• ID
  rs8259909
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:87843211 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CCATC CATAAGTAGA ATAGGTTAGG
  R
  GACACTCCTT AAGAACACTT ATTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	BALB/cByJ	BALB/cJ	C57BL/6J	NZB/BlNJ	SPRET/EiJ
ss12756315	M26940_157_2	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	BALB/cByJ	BALB/cJ	C57BL/6J	NZB/BlNJ	SPRET/EiJ
rs8259909					SNP	A	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:87843211 () rs orientation: reverse

Symbol	Name	Function Class
Csn2	casein beta	within coordinates
D5Mit12	DNA segment, Chr 5, Massachusetts Institute of Technology 12	1374 bp distal
D5Mit16	DNA segment, Chr 5, Massachusetts Institute of Technology 16	1334 bp distal
D5Mit16.1	DNA segment, Chr 5, Massachusetts Institute of Technology 16.1	1177 bp distal
D5Mit16.2	DNA segment, Chr 5, Massachusetts Institute of Technology 16.2	1489 bp distal
Tssr1529	transcription start site region 1529	791 bp downstream
Tssr46883	transcription start site region 46883	841 bp downstream
Tssr46884	transcription start site region 46884	826 bp downstream
Tssr46885	transcription start site region 46885	805 bp downstream
Tssr46886	transcription start site region 46886	775 bp downstream
Tssr46887	transcription start site region 46887	758 bp downstream
Tssr46888	transcription start site region 46888	652 bp downstream
Tssr46889	transcription start site region 46889	633 bp downstream
Tssr46890	transcription start site region 46890	600 bp downstream
Tssr46891	transcription start site region 46891	587 bp downstream
Tssr46892	transcription start site region 46892	558 bp downstream
Tssr46893	transcription start site region 46893	532 bp downstream
Tssr46894	transcription start site region 46894	487 bp downstream
Tssr46895	transcription start site region 46895	467 bp downstream
Tssr46896	transcription start site region 46896	388 bp downstream
Tssr51618	transcription start site region 51618	812 bp upstream
Tssr51619	transcription start site region 51619	778 bp upstream
Tssr51620	transcription start site region 51620	768 bp upstream
Tssr51621	transcription start site region 51621	749 bp upstream
Tssr51622	transcription start site region 51622	713 bp upstream
Tssr51623	transcription start site region 51623	697 bp upstream
Tssr51624	transcription start site region 51624	680 bp upstream
Tssr51625	transcription start site region 51625	670 bp upstream
Tssr51626	transcription start site region 51626	658 bp upstream
Tssr51627	transcription start site region 51627	632 bp upstream
Tssr51628	transcription start site region 51628	522 bp upstream
Tssr51629	transcription start site region 51629	428 bp upstream
Tssr51630	transcription start site region 51630	380 bp upstream
Tssr51631	transcription start site region 51631	341 bp upstream
Tssr51632	transcription start site region 51632	82 bp upstream
Tssr51633	transcription start site region 51633	701 bp downstream
Tssr51634	transcription start site region 51634	823 bp downstream
Tssr51635	transcription start site region 51635	1787 bp downstream
Tssr51636	transcription start site region 51636	1813 bp downstream
Tssr51637	transcription start site region 51637	1926 bp downstream