rs8259911 SNP Detail

Summary

• ID
  rs8259911
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:87843013 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CTGCT AGATTTAAAG CCATTAATTA
  Y
  TGTATTCACC TAGGACATGG TAGAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12756317	M26940_157_4	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8259911					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:87843013 () rs orientation: reverse

Symbol	Name	Function Class
Csn2	casein beta	within coordinates
D5Mit12	DNA segment, Chr 5, Massachusetts Institute of Technology 12	1176 bp distal
D5Mit16	DNA segment, Chr 5, Massachusetts Institute of Technology 16	1136 bp distal
D5Mit16.1	DNA segment, Chr 5, Massachusetts Institute of Technology 16.1	979 bp distal
D5Mit16.2	DNA segment, Chr 5, Massachusetts Institute of Technology 16.2	1291 bp distal
Tssr1529	transcription start site region 1529	593 bp downstream
Tssr46883	transcription start site region 46883	643 bp downstream
Tssr46884	transcription start site region 46884	628 bp downstream
Tssr46885	transcription start site region 46885	607 bp downstream
Tssr46886	transcription start site region 46886	577 bp downstream
Tssr46887	transcription start site region 46887	560 bp downstream
Tssr46888	transcription start site region 46888	454 bp downstream
Tssr46889	transcription start site region 46889	435 bp downstream
Tssr46890	transcription start site region 46890	402 bp downstream
Tssr46891	transcription start site region 46891	389 bp downstream
Tssr46892	transcription start site region 46892	360 bp downstream
Tssr46893	transcription start site region 46893	334 bp downstream
Tssr46894	transcription start site region 46894	289 bp downstream
Tssr46895	transcription start site region 46895	269 bp downstream
Tssr46896	transcription start site region 46896	190 bp downstream
Tssr51618	transcription start site region 51618	614 bp upstream
Tssr51619	transcription start site region 51619	580 bp upstream
Tssr51620	transcription start site region 51620	570 bp upstream
Tssr51621	transcription start site region 51621	551 bp upstream
Tssr51622	transcription start site region 51622	515 bp upstream
Tssr51623	transcription start site region 51623	499 bp upstream
Tssr51624	transcription start site region 51624	482 bp upstream
Tssr51625	transcription start site region 51625	472 bp upstream
Tssr51626	transcription start site region 51626	460 bp upstream
Tssr51627	transcription start site region 51627	434 bp upstream
Tssr51628	transcription start site region 51628	324 bp upstream
Tssr51629	transcription start site region 51629	230 bp upstream
Tssr51630	transcription start site region 51630	182 bp upstream
Tssr51631	transcription start site region 51631	143 bp upstream
Tssr51632	transcription start site region 51632	114 bp downstream
Tssr51633	transcription start site region 51633	899 bp downstream
Tssr51634	transcription start site region 51634	1021 bp downstream
Tssr51635	transcription start site region 51635	1985 bp downstream