rs8260627 SNP Detail

Summary

• ID
  rs8260627
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:130538889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTTTCGAGA AACGCCAAGC
  AGGTGCTTTG CGCGCTTTGG TCCAGCACCC CCTGGCCGGG GTGACTAGGC ATCGCGCTGG
  GGAAAGCCGC GTATCATACC AGGGATCTTG GCAATGTTGA GATACATGGC TTTGGGATCG
  CAAGAACTCT TGTCGCCTTC CCTTCCTTCT CCCTTTCTGC TGAGTCCTCT CTTCTTGGAA
  Y
  TATCTAAGCA GTGTTTTTCT TATAGAACCT CTTCGTGAAA ACTTTCACTT TGGGGAGAGG
  GAACATCTCT GCTCAACTCA GCAAGCATTT TTCTCACCCC GCCTCCTAAG CAGAAAACGA
  TTTAGTAACT CCGGCCCTCT TCCTCCATTG ATTTAAATCA ACTTTACAAA AACGCCCACG
  ATTTGGTCCT TTTTTGGTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12757191	Prss11_1_JC6995_1	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8260627					SNP	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:130538889 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19812	CpG island 19812	6 bp distal
Htra1	HtrA serine peptidase 1	within coordinates
Rr656402	regulatory region 656402	946 bp distal
Tssr69536	transcription start site region 69536	988 bp downstream
Tssr69537	transcription start site region 69537	905 bp downstream
Tssr69538	transcription start site region 69538	891 bp downstream