rs8261340 SNP Detail

Summary

• ID
  rs8261340
• Variation Type
  SNP
• Alleles
  A/C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:167199908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCTCATCAC CATGACTTCA TCACCGATTC ACAGACTGTG
  TCGCGGGGGT GGGGGTGGGG TGCGCTCACA GCTTTGCTCG TAATGGGTAG AAATGGCACC
  V
  TTATTTCACT AAGACTCTCA GAAAGAGATG CAGGCAGGAG CTTTAGGTAT GAGGCTGATG
  CCAGATAAGT TTTTATTATA TTAAAAAAAA AAAAAAAAC                       
  
  V = A/C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/Lac	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss12757918	Mgst3_1_AN4489_1	ROCHEBIO	RPAMM	f	SNP						C		G				A
ss60342648	NES15844331	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	G	A	A	G		A	G	G
ss146037859	ENSMUSSNP6424506	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/Lac	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs8261340					SNP	A	A	A	A	A	?	G	G	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60342648	NES15844331	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:167199908 () rs orientation: forward

Symbol	Name	Function Class
Gm71125	predicted gene, 71125	1822 bp upstream
Mgst3	microsomal glutathione S-transferase 3	mRNA-UTR
Rr422700	regulatory region 422700	1647 bp distal
Rr422701	regulatory region 422701	1903 bp distal
Rr422702	regulatory region 422702	1678 bp proximal
Rr422703	regulatory region 422703	1833 bp proximal
Tssr14852	transcription start site region 14852	78 bp downstream
Tssr14853	transcription start site region 14853	1182 bp downstream