rs8261341 SNP Detail

Summary

• ID
  rs8261341
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:167199947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

        GATT CCCAGACTGT GTCGCGGGGG TGGGGGTGGG GTGCGCTCAC AGCTTTGCTC
  GTAATGGGTA GAAATGGCAC CNTTATTTCA CTAAGACTCT CAGAAAGAGA TGCAGGCAGG
  R
  GCTTTNGGTA TGAGGCTGAT GCCAGATAAG tttttattat atttaaaaaa aaaaaaaaaC
  CAGTGCAACT GGAAATCAGG GTGAGTCGCT GGAGGTGAGT GAGAGTCGAA AGGCCCTCCN
  CACCTCAGGG GGGGCAGGAT CTGGACCCGT ACCCAAACC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cJ	C3H/HeJ	DBA/2J	NZB/BlNJ
ss12757919	Mgst3_1_AN4489_2	ROCHEBIO	RPAMM	f	SNP	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	BALB/cJ	C3H/HeJ	DBA/2J	NZB/BlNJ
rs8261341					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:167199947 () rs orientation: forward

Symbol	Name	Function Class
Gm71125	predicted gene, 71125	1783 bp upstream
Mgst3	microsomal glutathione S-transferase 3	mRNA-UTR
Rr422700	regulatory region 422700	1686 bp distal
Rr422701	regulatory region 422701	1942 bp distal
Rr422702	regulatory region 422702	1639 bp proximal
Rr422703	regulatory region 422703	1794 bp proximal
Tssr14852	transcription start site region 14852	39 bp downstream
Tssr14853	transcription start site region 14853	1143 bp downstream