rs8261342 SNP Detail

Summary

• ID
  rs8261342
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:167199953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GATTCCCAGA CTGTGTCGCG GGGGTGGGGG TGGGGTGCGC TCACAGCTTT GCTCGTAATG
  GGTAGAAATG GCACCNTTAT TTCACTAAGA CTCTCAGAAA GAGATGCAGG CAGGNGCTTT
  W
  GGTATGAGGC TGATGCCAGA TAAGttttta ttatatttaa aaaaaaaaaa aaaCCAGTGC
  AACTGGAAAT CAGGGTGAGT CGCTGGAGGT GAGTGAGAGT CGAAAGGCCC TCCNCACCTC
  AGGGGGGGCA GGATCTGGAC CCGTACCCAA ACC                             
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	BALB/cByJ	BALB/cJ	C3H/HeJ	DBA/2J	NZB/BlNJ	NZW/Lac
ss12757920	Mgst3_1_AN4489_3	ROCHEBIO	RPAMM	f	SNP	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/HeJ	BALB/cByJ	BALB/cJ	C3H/HeJ	DBA/2J	NZB/BlNJ	NZW/Lac
rs8261342					SNP	A	A	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:167199953 () rs orientation: forward

Symbol	Name	Function Class
Gm71125	predicted gene, 71125	1777 bp upstream
Mgst3	microsomal glutathione S-transferase 3	mRNA-UTR
Rr422700	regulatory region 422700	1692 bp distal
Rr422701	regulatory region 422701	1948 bp distal
Rr422702	regulatory region 422702	1633 bp proximal
Rr422703	regulatory region 422703	1788 bp proximal
Tssr14852	transcription start site region 14852	33 bp downstream
Tssr14853	transcription start site region 14853	1137 bp downstream