rs8261360 SNP Detail

Summary

• ID
  rs8261360
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:167200258 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                         ACCTTGCAC ATAGATTCTA GCGTACTGGT GGCTCTAGGC
  TAGAGTTGGC CAACCTCCCA ATAGCACGCG GTTGACGATA TGACCTCAGA TGCTAGAGCA
  S
  AATGGCTTGT GGATGTCCTG GTGACTTCCG CTGTCTTCTT TTTCAGACCC TAGCAAGCGG
  TATCGAGGAG CCGTGGGCTC TCTTGCCCTC TTTGCCCTGA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss12757938	Mgst3_1_AN4490_17	ROCHEBIO	RPAMM	f	SNP	C			C	C	C	C	C	C		C	C	C	G				C		C	C			G
ss60342647	NES15844332	PERLEGEN	MM_PANEL2	r	SNP		G			G	G		G		G	G		G	C	G	G	C		G			G	C		G
ss146037872	ENSMUSSNP944556	ENSEMBL	ENSEMBL_Sanger	r	SNP			G		G									C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs8261360					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60342647	NES15844332	PERLEGEN	MM_PANEL	r	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:167200258 () rs orientation: reverse

Symbol	Name	Function Class
Gm71125	predicted gene, 71125	1472 bp upstream
Mgst3	microsomal glutathione S-transferase 3	Intron
Rr422700	regulatory region 422700	1997 bp distal
Rr422702	regulatory region 422702	1328 bp proximal
Rr422703	regulatory region 422703	1483 bp proximal
Tssr14852	transcription start site region 14852	267 bp upstream
Tssr14853	transcription start site region 14853	832 bp downstream
Tssr14854	transcription start site region 14854	1852 bp downstream