rs8261362 SNP Detail

Summary

• ID
  rs8261362
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:167200178 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AAGCG GTATCGAGGA GCCGTGGGCT
  Y
  TCTTGCCCTC TTTGCCCTGA TGGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12757940	Mgst3_1_AN4490_19	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8261362					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:167200178 () rs orientation: reverse

Symbol	Name	Function Class
Gm71125	predicted gene, 71125	1552 bp upstream
Mgst3	microsomal glutathione S-transferase 3	Coding-NonSynonymous
Rr422700	regulatory region 422700	1917 bp distal
Rr422702	regulatory region 422702	1408 bp proximal
Rr422703	regulatory region 422703	1563 bp proximal
Tssr14852	transcription start site region 14852	187 bp upstream
Tssr14853	transcription start site region 14853	912 bp downstream
Tssr14854	transcription start site region 14854	1932 bp downstream