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rs8261364 SNP Detail
Summary
  • ID
    rs8261364
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr1:167200453 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCATTGTGCT CTAGCATCTG
    AGGTCATATC GTCAACCGCG TGCTATTGGG AGGTTGGCCA ACTCTAGCCT AGAGCCACCA
    GTACGCTAGA ATCTATGTGC AAGGTAACTG TACATTAGCA TTGCCTAGAC TATGGAGGAC
    TCTGTAAGTC AAGCAACTTT GTCTTAGGCC CAGTAGGAGC ATCTGCCTCC GGAATGACAC
    R
    TAGCCTTTTC CTCTCCGATA GCCATTTATC CCAGCCGTGG TCAGGTTTTG CTGACGCAGC
    ACCTTGGTTT GATTCCTGGC AGCTCTGGCT GGCCCCTTAA TATTTCTAAG GCTGTTTCCT
    CATCTGCACA ACAGGCTATT CGCTGTACAT GGAATTGCTG TGAGCTTGCC TAGCATATGT
    AAAGTTCTCA GGCAAGCAAC                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129/Sv
129S1/SvImJ
A/HeJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
MRL/MpJ
NOD/ShiLtJ
NZB/BlNJ
NZW/Lac
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss12757942 Mgst3_1_AN4491_1 ROCHEBIO RPAMM f SNP G G G G G G A G G G G
ss60342643 NES15844337 PERLEGEN MM_PANEL2 f SNP G G G G G G A G G G G G G G G
SNP Consensus Information
SNP Consensus Type
129/Sv
129S1/SvImJ
A/HeJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
MRL/MpJ
NOD/ShiLtJ
NZB/BlNJ
NZW/Lac
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs8261364 SNP G G G G G G G G G A G G G G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss60342643 NES15844337 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:167200453 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm71125 predicted gene, 71125 1277 bp upstream
Mgst3 microsomal glutathione S-transferase 3 Intron
Rr422702 regulatory region 422702 1133 bp proximal
Rr422703 regulatory region 422703 1288 bp proximal
Tssr14852 transcription start site region 14852 462 bp upstream
Tssr14853 transcription start site region 14853 637 bp downstream
Tssr14854 transcription start site region 14854 1657 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory